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14 papers

Individual Identification of Prey in Carnivore Scats.

Eriksson CE et al. · Jul 1, 2026

Noninvasive genetic sampling is widely used in ecology and conservation to identify predators and their diets but recovering individual-level information from consumed prey remains largely unexplored. We evaluated whether individual prey can be reliably genotyped from carnivore scats and assessed limitations associated with degraded and mixed DNA sources. We developed a 31-locus SNP panel optimized for genotyping degraded elk (Cervus canadensis) DNA using amplicon sequencing. We validated prey genotyping by matching elk genotypes recovered from carnivore scats ('carcass scats') collected at cougar (Puma concolor) kill sites to genotypes from corresponding elk carcasses. We also genotyped scats collected throughout the study area, identified as containing elk using DNA metabarcoding ('survey scats'). To avoid misidentifying multiple individuals in a scat as a unique genotype, we evaluated artificial mixtures of prey DNA to assess the ability to detect and filter samples containing mixed DNA. Elk genotypes recovered from carcass scats matched associated carcass genotypes, confirming accurate recovery of individual prey DNA from carnivore scats. Genotyping success was 88% in fresh carcass scats and 74% in survey scats of unknown age. Heterozygosity excess filtering removed most mixed samples, although one of 24 mixtures with equal DNA contributions from two individuals produced a false unique genotype. Our results demonstrate that carnivore scats can serve as a reliable source of individual-level prey DNA under appropriate conditions. This method provides a new data stream on individual prey mortality, predation rates, and scavenging dynamics, processes that have previously been difficult to quantify without invasive capture and collaring techniques.

Environmental Science

RETRACTED: Ferlazzo et al. A Flavonoid-Rich Extract from Bergamot Juice, Alone or in Association with Curcumin and Resveratrol, Shows Protective Effects in a Murine Model of Cadmium-Induced Testicular Injury. Pharmaceuticals 2021, 14, 386.

Ferlazzo N et al. · Jun 25, 2026

The journal retracts the article titled, "A Flavonoid-Rich Extract from Bergamot Juice, Alone or in Association with Curcumin and Resveratrol, Shows Protective Effects in a Murine Model of Cadmium-Induced Testicular Injury" [...].

Environmental Science

Towards modeling phage therapy.

de Boer RJ et al. · Jun 22, 2026

Patients infected with life-threatening multi-drug resistant (MDR) bacteria have been treated with cocktails of bacteriophages. This is a complicated form of personalized medicine as the phages given to a patient have to be selected beforehand on the basis of their lytic capacity of the infecting bacteria. Because bacteria rapidly become resistant, the evolution of resistance to a diverse cocktail of phages is a complicated dynamical process, during which competing bacterial strains replace one another by accumulating several resistance mechanisms, each of which may involve a fitness cost. As a consequence, it is typically not known why a particular phage therapy succeeded or failed, and how one can optimize the composition of the cocktails to maximize the rate of success. To improve upon this, we extend an existing in vivo-calibrated mouse model into a novel mathematical model for the human situation, and include multiple phages infecting multiple bacterial strains, differing in their resistance to each of the phages. We adjust several parameter estimates of the bacterial model to the human situation, and use the model to describe a successful case of phage therapy involving several cocktails, each containing several phages. In the model, treatment success crucially depended on pretreatment resistance levels, and on the diversity and the timing of the cocktails. Once an appropriate cocktail is found, it is less important to further optimize the infection rates of the phages. Resistant bacterial strains expand rapidly when sensitive strains decline, and the higher the infectivity of the phages, the faster resistant strains expand. Because resistance evolves rapidly, it is best to provide a diverse set of phages right from the start of therapy, i.e., to hit hard and early, and create a high genetic barrier to bacterial resistance.

Environmental Science